请问一下安装软件出错这是少了什么安装包呀?

kangsgo

貌似是C语言写的

1. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/fpmain.c -o obj/fpmain.o
   
2. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/psorting.c -o obj/psorting.o
   
3. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/pscoring.c -o obj/pscoring.o
   
4. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/utils.c -o obj/utils.o
   
5. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/pertable.c -o obj/pertable.o
   
6. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/memhandler.c -o obj/memhandler.o
   
7. src/memhandler.c: In function ‘print_number_of_objects_in_memory’:
   
8. src/memhandler.c:410:9: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘size_t’ [-Wformat=]
   
9.          printf("\nHaving %d objects in memory\n",ST_lst_alloc->n_ptr);
   
10.          ^
    
11. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/voronoi.c -o obj/voronoi.o
    
12. src/voronoi.c: In function ‘fill_vvertices’:
    
13. src/voronoi.c:218:8: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
    
14.   char *status = NULL ;
    
15.         ^
    
16. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/sort.c -o obj/sort.o
    
17. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/calc.c -o obj/calc.o
    
18. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/writepdb.c -o obj/writepdb.o
    
19. src/writepdb.c: In function ‘write_pdb_atom_line’:
    
20. src/writepdb.c:107:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
    
21.   int status = 0 ;
    
22.       ^
    
23. src/writepdb.c: In function ‘write_pqr_atom_line’:
    
24. src/writepdb.c:176:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
    
25.   int status ;
    
26.       ^
    
27. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/rpdb.c -o obj/rpdb.o
    
28. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/tparams.c -o obj/tparams.o
    
29. src/tparams.c: In function ‘add_list_data’:
    
30. src/tparams.c:246:6: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
    
31.   int n,
    
32.       ^
    
33. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/fparams.c -o obj/fparams.o
    
34. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/pocket.c -o obj/pocket.o
    
35. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/refine.c -o obj/refine.o
    
36. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/descriptors.c -o obj/descriptors.o
    
37. src/descriptors.c: In function ‘set_descriptors’:
    
38. src/descriptors.c:266:13: warning: implicit declaration of function ‘set_ASA’ [-Wimplicit-function-declaration]
    
39.              set_ASA(desc, pdb, tvert, nvert);
    
40.              ^
    
41. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/cluster.c -o obj/cluster.o
    
42. src/cluster.c: In function ‘pck_final_clust’:
    
43. src/cluster.c:96:6: warning: variable ‘nflag’ set but not used [-Wunused-but-set-variable]
    
44.   int nflag ;
    
45.       ^
    
46. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/aa.c -o obj/aa.o
    
47. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/fpocket.c -o obj/fpocket.o
    
48. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/write_visu.c -o obj/write_visu.o
    
49. src/write_visu.c: In function ‘write_vmd’:
    
50. src/write_visu.c:104:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
    
51.   int status ;
    
52.       ^
    
53. src/write_visu.c: In function ‘write_pymol’:
    
54. src/write_visu.c:203:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
    
55.   int status ;
    
56.       ^
    
57. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/fpout.c -o obj/fpout.o
    
58. src/fpout.c: In function ‘write_out_fpocket’:
    
59. src/fpout.c:88:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
    
60.   int status ;
    
61.       ^
    
62. src/fpout.c: In function ‘write_out_fpocket_DB’:
    
63. src/fpout.c:223:9: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
    
64.    system(command) ;
    
65.          ^
    
66. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/atom.c -o obj/atom.o
    
67. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/writepocket.c -o obj/writepocket.o
    
68. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/voronoi_lst.c -o obj/voronoi_lst.o
    
69. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/asa.c -o obj/asa.o
    
70. src/asa.c: In function ‘get_unique_atoms’:
    
71. src/asa.c:165:17: warning: variable ‘vcur’ set but not used [-Wunused-but-set-variable]
    
72.      s_vvertice *vcur = NULL ;
    
73.                  ^
    
74. src/asa.c: In function ‘get_unique_atoms_DEPRECATED’:
    
75. src/asa.c:210:17: warning: variable ‘vcur’ set but not used [-Wunused-but-set-variable]
    
76.      s_vvertice *vcur = NULL ;
    
77.                  ^
    
78. src/asa.c: In function ‘set_ASA’:
    
79. src/asa.c:277:24: warning: "/*" within comment [-Wcomment]
    
80.      /*int *ua=NULL;    /*unique atoms contacting vvertices*/
    
81. ^
    
82. gcc -O -g -pg -ansi -c src/qhull/qvoronoi.c -o src/qhull/qvoronoi.o
    
83. gcc -O -g -pg -ansi -c src/qhull/user.c -o src/qhull/user.o
    
84. gcc -O -g -pg -ansi -c src/qhull/global.c -o src/qhull/global.o
    
85. In file included from /usr/include/string.h:640:0,
    
86.                  from src/qhull/qhull_a.h:28,
    
87.                  from src/qhull/global.c:16:
    
88. In function ‘strncat’,
    
89.     inlined from ‘qh_initflags’ at src/qhull/global.c:548:12:
    
90. /usr/include/x86_64-linux-gnu/bits/string3.h:150:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default]
    
91.    return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
    
92.    ^
    
93. gcc -O -g -pg -ansi -c src/qhull/io.c -o src/qhull/io.o
    
94. src/qhull/io.c: In function ‘qh_produce_output’:
    
95. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
    
96.       qh normal_size, d_1, d_1 + SETelemsize);
    
97.       ^
    
98. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
    
99. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long unsigned int’ [-Wformat=]
    
100. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long unsigned int’ [-Wformat=]
     
101. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 9 has type ‘long unsigned int’ [-Wformat=]
     
102. gcc -O -g -pg -ansi -c src/qhull/geom2.c -o src/qhull/geom2.o
     
103. gcc -O -g -pg -ansi -c src/qhull/poly2.c -o src/qhull/poly2.o
     
104. gcc -O -g -pg -ansi -c src/qhull/merge.c -o src/qhull/merge.o
     
105. gcc -O -g -pg -ansi -c src/qhull/qhull.c -o src/qhull/qhull.o
     
106. gcc -O -g -pg -ansi -c src/qhull/geom.c -o src/qhull/geom.o
     
107. gcc -O -g -pg -ansi -c src/qhull/poly.c -o src/qhull/poly.o
     
108. gcc -O -g -pg -ansi -c src/qhull/qset.c -o src/qhull/qset.o
     
109. gcc -O -g -pg -ansi -c src/qhull/mem.c -o src/qhull/mem.o
     
110. gcc -O -g -pg -ansi -c src/qhull/stat.c -o src/qhull/stat.o
     
111. src/qhull/stat.c: In function ‘qh_initstatistics’:
     
112. src/qhull/stat.c:462:5: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
     
113.      fprintf (qhmem.ferr, "qhull error (qh_initstatistics): increase size of qhstat.id[].\n\
     
114.      ^
     
115. gcc -fno-underscoring -lm obj/fpmain.o obj/psorting.o obj/pscoring.o obj/utils.o obj/pertable.o obj/memhandler.o obj/voronoi.o obj/sort.o obj/calc.o obj/writepdb.o obj/rpdb.o obj/tparams.o obj/fparams.o obj/pocket.o obj/refine.o obj/descriptors.o obj/cluster.o obj/aa.o obj/fpocket.o obj/write_visu.o obj/fpout.o obj/atom.o obj/writepocket.o obj/voronoi_lst.o obj/asa.o src/qhull/qvoronoi.o src/qhull/user.o src/qhull/global.o src/qhull/io.o src/qhull/geom2.o src/qhull/poly2.o src/qhull/merge.o src/qhull/qhull.o src/qhull/geom.o src/qhull/poly.o src/qhull/qset.o src/qhull/mem.o src/qhull/stat.o -o bin/fpocket
     
116. obj/pscoring.o：在函数‘drug_score_pocket’中：
     
117. /home/gromacs/md/fpocket2/src/pscoring.c:304：对‘exp’未定义的引用
     
118. /home/gromacs/md/fpocket2/src/pscoring.c:304：对‘exp’未定义的引用
     
119. /home/gromacs/md/fpocket2/src/pscoring.c:305：对‘exp’未定义的引用
     
120. /home/gromacs/md/fpocket2/src/pscoring.c:305：对‘exp’未定义的引用
     
121. /home/gromacs/md/fpocket2/src/pscoring.c:306：对‘exp’未定义的引用
     
122. obj/pscoring.o:/home/gromacs/md/fpocket2/src/pscoring.c:306: more undefined references to `exp' follow
     
123. obj/calc.o：在函数‘dist’中：
     
124. /home/gromacs/md/fpocket2/src/calc.c:81：对‘sqrtf’未定义的引用
     
125. obj/cluster.o：在函数‘pck_final_clust’中：
     
126. /home/gromacs/md/fpocket2/src/cluster.c:148：对‘exp’未定义的引用
     
127. /home/gromacs/md/fpocket2/src/cluster.c:148：对‘exp’未定义的引用
     
128. obj/asa.o：在函数‘get_points_on_sphere’中：
     
129. /home/gromacs/md/fpocket2/src/asa.c:454：对‘sincos’未定义的引用
     
130. /home/gromacs/md/fpocket2/src/asa.c:452：对‘sqrt’未定义的引用
     
131. src/qhull/io.o：在函数‘qh_geomplanes’中：
     
132. /home/gromacs/md/fpocket2/src/qhull/io.c:819：对‘sqrt’未定义的引用
     
133. src/qhull/io.o：在函数‘qh_printbegin’中：
     
134. /home/gromacs/md/fpocket2/src/qhull/io.c:1356：对‘sqrt’未定义的引用
     
135. src/qhull/geom2.o：在函数‘qh_distround’中：
     
136. /home/gromacs/md/fpocket2/src/qhull/geom2.c:376：对‘sqrt’未定义的引用
     
137. src/qhull/geom2.o：在函数‘qh_detroundoff’中：
     
138. /home/gromacs/md/fpocket2/src/qhull/geom2.c:198：对‘sqrt’未定义的引用
     
139. src/qhull/geom2.o:/home/gromacs/md/fpocket2/src/qhull/geom2.c:226: more undefined references to `sqrt' follow
     
140. src/qhull/poly2.o：在函数‘qh_initialvertices’中：
     
141. /home/gromacs/md/fpocket2/src/qhull/poly2.c:1849：对‘floor’未定义的引用
     
142. src/qhull/qhull.o：在函数‘qh_nextfurthest’中：
     
143. /home/gromacs/md/fpocket2/src/qhull/qhull.c:708：对‘floor’未定义的引用
     
144. src/qhull/geom.o：在函数‘qh_normalize2’中：
     
145. /home/gromacs/md/fpocket2/src/qhull/geom.c:811：对‘sqrt’未定义的引用
     
146. /home/gromacs/md/fpocket2/src/qhull/geom.c:813：对‘sqrt’未定义的引用
     
147. /home/gromacs/md/fpocket2/src/qhull/geom.c:815：对‘sqrt’未定义的引用
     
148. /home/gromacs/md/fpocket2/src/qhull/geom.c:822：对‘sqrt’未定义的引用
     
149. /home/gromacs/md/fpocket2/src/qhull/geom.c:850：对‘sqrt’未定义的引用
     
150. src/qhull/stat.o:/home/gromacs/md/fpocket2/src/qhull/stat.c:691: more undefined references to `sqrt' follow
     
151. collect2: error: ld returned 1 exit status
     
152. make: *** [bin/fpocket] 错误 1

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almostsir

我不知道你发这么多那段是重要的

kangsgo

almostsir 发表于 2016-9-16 17:16
我不知道你发这么多那段是重要的

我只是把错误贴全了,有什么问题?

ccczer

apt-get updata/yum update

Pioneer

不懂帮顶下

pengxp1996

看上去不是linux系统