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标题: 请问一下安装软件出错这是少了什么安装包呀? [打印本页]
作者: kangsgo    时间: 2016-9-16 17:12
标题: 请问一下安装软件出错这是少了什么安装包呀?
貌似是C语言写的

  1. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/fpmain.c -o obj/fpmain.o
  2. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/psorting.c -o obj/psorting.o
  3. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/pscoring.c -o obj/pscoring.o
  4. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/utils.c -o obj/utils.o
  5. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/pertable.c -o obj/pertable.o
  6. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/memhandler.c -o obj/memhandler.o
  7. src/memhandler.c: In function ‘print_number_of_objects_in_memory’:
  8. src/memhandler.c:410:9: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘size_t’ [-Wformat=]
  9.          printf("\nHaving %d objects in memory\n",ST_lst_alloc->n_ptr);
  10.          ^
  11. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/voronoi.c -o obj/voronoi.o
  12. src/voronoi.c: In function ‘fill_vvertices’:
  13. src/voronoi.c:218:8: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  14.   char *status = NULL ;
  15.         ^
  16. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/sort.c -o obj/sort.o
  17. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/calc.c -o obj/calc.o
  18. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/writepdb.c -o obj/writepdb.o
  19. src/writepdb.c: In function ‘write_pdb_atom_line’:
  20. src/writepdb.c:107:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  21.   int status = 0 ;
  22.       ^
  23. src/writepdb.c: In function ‘write_pqr_atom_line’:
  24. src/writepdb.c:176:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  25.   int status ;
  26.       ^
  27. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/rpdb.c -o obj/rpdb.o
  28. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/tparams.c -o obj/tparams.o
  29. src/tparams.c: In function ‘add_list_data’:
  30. src/tparams.c:246:6: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
  31.   int n,
  32.       ^
  33. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/fparams.c -o obj/fparams.o
  34. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/pocket.c -o obj/pocket.o
  35. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/refine.c -o obj/refine.o
  36. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/descriptors.c -o obj/descriptors.o
  37. src/descriptors.c: In function ‘set_descriptors’:
  38. src/descriptors.c:266:13: warning: implicit declaration of function ‘set_ASA’ [-Wimplicit-function-declaration]
  39.              set_ASA(desc, pdb, tvert, nvert);
  40.              ^
  41. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/cluster.c -o obj/cluster.o
  42. src/cluster.c: In function ‘pck_final_clust’:
  43. src/cluster.c:96:6: warning: variable ‘nflag’ set but not used [-Wunused-but-set-variable]
  44.   int nflag ;
  45.       ^
  46. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/aa.c -o obj/aa.o
  47. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/fpocket.c -o obj/fpocket.o
  48. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/write_visu.c -o obj/write_visu.o
  49. src/write_visu.c: In function ‘write_vmd’:
  50. src/write_visu.c:104:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  51.   int status ;
  52.       ^
  53. src/write_visu.c: In function ‘write_pymol’:
  54. src/write_visu.c:203:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  55.   int status ;
  56.       ^
  57. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/fpout.c -o obj/fpout.o
  58. src/fpout.c: In function ‘write_out_fpocket’:
  59. src/fpout.c:88:6: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  60.   int status ;
  61.       ^
  62. src/fpout.c: In function ‘write_out_fpocket_DB’:
  63. src/fpout.c:223:9: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  64.    system(command) ;
  65.          ^
  66. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/atom.c -o obj/atom.o
  67. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/writepocket.c -o obj/writepocket.o
  68. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/voronoi_lst.c -o obj/voronoi_lst.o
  69. gcc -Wall -Wextra -Wwrite-strings -Wstrict-prototypes -DM_OS_LINUX -DMNO_MEM_DEBUG -O2 -g -pg -std=c99 -c src/asa.c -o obj/asa.o
  70. src/asa.c: In function ‘get_unique_atoms’:
  71. src/asa.c:165:17: warning: variable ‘vcur’ set but not used [-Wunused-but-set-variable]
  72.      s_vvertice *vcur = NULL ;
  73.                  ^
  74. src/asa.c: In function ‘get_unique_atoms_DEPRECATED’:
  75. src/asa.c:210:17: warning: variable ‘vcur’ set but not used [-Wunused-but-set-variable]
  76.      s_vvertice *vcur = NULL ;
  77.                  ^
  78. src/asa.c: In function ‘set_ASA’:
  79. src/asa.c:277:24: warning: "/*" within comment [-Wcomment]
  80.      /*int *ua=NULL;    /*unique atoms contacting vvertices*/
  81. ^
  82. gcc -O -g -pg -ansi -c src/qhull/qvoronoi.c -o src/qhull/qvoronoi.o
  83. gcc -O -g -pg -ansi -c src/qhull/user.c -o src/qhull/user.o
  84. gcc -O -g -pg -ansi -c src/qhull/global.c -o src/qhull/global.o
  85. In file included from /usr/include/string.h:640:0,
  86.                  from src/qhull/qhull_a.h:28,
  87.                  from src/qhull/global.c:16:
  88. In function ‘strncat’,
  89.     inlined from ‘qh_initflags’ at src/qhull/global.c:548:12:
  90. /usr/include/x86_64-linux-gnu/bits/string3.h:150:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default]
  91.    return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
  92.    ^
  93. gcc -O -g -pg -ansi -c src/qhull/io.c -o src/qhull/io.o
  94. src/qhull/io.c: In function ‘qh_produce_output’:
  95. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long unsigned int’ [-Wformat=]
  96.       qh normal_size, d_1, d_1 + SETelemsize);
  97.       ^
  98. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  99. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long unsigned int’ [-Wformat=]
  100. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long unsigned int’ [-Wformat=]
  101. src/qhull/io.c:73:6: warning: format ‘%d’ expects argument of type ‘int’, but argument 9 has type ‘long unsigned int’ [-Wformat=]
  102. gcc -O -g -pg -ansi -c src/qhull/geom2.c -o src/qhull/geom2.o
  103. gcc -O -g -pg -ansi -c src/qhull/poly2.c -o src/qhull/poly2.o
  104. gcc -O -g -pg -ansi -c src/qhull/merge.c -o src/qhull/merge.o
  105. gcc -O -g -pg -ansi -c src/qhull/qhull.c -o src/qhull/qhull.o
  106. gcc -O -g -pg -ansi -c src/qhull/geom.c -o src/qhull/geom.o
  107. gcc -O -g -pg -ansi -c src/qhull/poly.c -o src/qhull/poly.o
  108. gcc -O -g -pg -ansi -c src/qhull/qset.c -o src/qhull/qset.o
  109. gcc -O -g -pg -ansi -c src/qhull/mem.c -o src/qhull/mem.o
  110. gcc -O -g -pg -ansi -c src/qhull/stat.c -o src/qhull/stat.o
  111. src/qhull/stat.c: In function ‘qh_initstatistics’:
  112. src/qhull/stat.c:462:5: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long unsigned int’ [-Wformat=]
  113.      fprintf (qhmem.ferr, "qhull error (qh_initstatistics): increase size of qhstat.id[].\n\
  114.      ^
  115. gcc -fno-underscoring -lm obj/fpmain.o obj/psorting.o obj/pscoring.o obj/utils.o obj/pertable.o obj/memhandler.o obj/voronoi.o obj/sort.o obj/calc.o obj/writepdb.o obj/rpdb.o obj/tparams.o obj/fparams.o obj/pocket.o obj/refine.o obj/descriptors.o obj/cluster.o obj/aa.o obj/fpocket.o obj/write_visu.o obj/fpout.o obj/atom.o obj/writepocket.o obj/voronoi_lst.o obj/asa.o src/qhull/qvoronoi.o src/qhull/user.o src/qhull/global.o src/qhull/io.o src/qhull/geom2.o src/qhull/poly2.o src/qhull/merge.o src/qhull/qhull.o src/qhull/geom.o src/qhull/poly.o src/qhull/qset.o src/qhull/mem.o src/qhull/stat.o -o bin/fpocket
  116. obj/pscoring.o：在函数‘drug_score_pocket’中：
  117. /home/gromacs/md/fpocket2/src/pscoring.c:304：对‘exp’未定义的引用
  118. /home/gromacs/md/fpocket2/src/pscoring.c:304：对‘exp’未定义的引用
  119. /home/gromacs/md/fpocket2/src/pscoring.c:305：对‘exp’未定义的引用
  120. /home/gromacs/md/fpocket2/src/pscoring.c:305：对‘exp’未定义的引用
  121. /home/gromacs/md/fpocket2/src/pscoring.c:306：对‘exp’未定义的引用
  122. obj/pscoring.o:/home/gromacs/md/fpocket2/src/pscoring.c:306: more undefined references to `exp' follow
  123. obj/calc.o：在函数‘dist’中：
  124. /home/gromacs/md/fpocket2/src/calc.c:81：对‘sqrtf’未定义的引用
  125. obj/cluster.o：在函数‘pck_final_clust’中：
  126. /home/gromacs/md/fpocket2/src/cluster.c:148：对‘exp’未定义的引用
  127. /home/gromacs/md/fpocket2/src/cluster.c:148：对‘exp’未定义的引用
  128. obj/asa.o：在函数‘get_points_on_sphere’中：
  129. /home/gromacs/md/fpocket2/src/asa.c:454：对‘sincos’未定义的引用
  130. /home/gromacs/md/fpocket2/src/asa.c:452：对‘sqrt’未定义的引用
  131. src/qhull/io.o：在函数‘qh_geomplanes’中：
  132. /home/gromacs/md/fpocket2/src/qhull/io.c:819：对‘sqrt’未定义的引用
  133. src/qhull/io.o：在函数‘qh_printbegin’中：
  134. /home/gromacs/md/fpocket2/src/qhull/io.c:1356：对‘sqrt’未定义的引用
  135. src/qhull/geom2.o：在函数‘qh_distround’中：
  136. /home/gromacs/md/fpocket2/src/qhull/geom2.c:376：对‘sqrt’未定义的引用
  137. src/qhull/geom2.o：在函数‘qh_detroundoff’中：
  138. /home/gromacs/md/fpocket2/src/qhull/geom2.c:198：对‘sqrt’未定义的引用
  139. src/qhull/geom2.o:/home/gromacs/md/fpocket2/src/qhull/geom2.c:226: more undefined references to `sqrt' follow
  140. src/qhull/poly2.o：在函数‘qh_initialvertices’中：
  141. /home/gromacs/md/fpocket2/src/qhull/poly2.c:1849：对‘floor’未定义的引用
  142. src/qhull/qhull.o：在函数‘qh_nextfurthest’中：
  143. /home/gromacs/md/fpocket2/src/qhull/qhull.c:708：对‘floor’未定义的引用
  144. src/qhull/geom.o：在函数‘qh_normalize2’中：
  145. /home/gromacs/md/fpocket2/src/qhull/geom.c:811：对‘sqrt’未定义的引用
  146. /home/gromacs/md/fpocket2/src/qhull/geom.c:813：对‘sqrt’未定义的引用
  147. /home/gromacs/md/fpocket2/src/qhull/geom.c:815：对‘sqrt’未定义的引用
  148. /home/gromacs/md/fpocket2/src/qhull/geom.c:822：对‘sqrt’未定义的引用
  149. /home/gromacs/md/fpocket2/src/qhull/geom.c:850：对‘sqrt’未定义的引用
  150. src/qhull/stat.o:/home/gromacs/md/fpocket2/src/qhull/stat.c:691: more undefined references to `sqrt' follow
  151. collect2: error: ld returned 1 exit status
  152. make: *** [bin/fpocket] 错误 1
复制代码

作者: almostsir    时间: 2016-9-16 17:16
我不知道你发这么多那段是重要的
作者: kangsgo    时间: 2016-9-16 17:21
almostsir 发表于 2016-9-16 17:16
我不知道你发这么多那段是重要的

我只是把错误贴全了,有什么问题?
作者: ccczer    时间: 2016-9-16 17:42
apt-get updata/yum update
作者: Pioneer    时间: 2016-9-16 17:56
不懂帮顶下
作者: pengxp1996    时间: 2016-9-16 18:05
看上去不是linux系统



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